Index

_

__add__() (autoprotocol.container.WellGroup method) __getitem__() (autoprotocol.container.WellGroup method) __getnewargs__() (autoprotocol.liquid_handle.liquid_class.VolumeCalibrationBin method) __len__() (autoprotocol.container.WellGroup method) __new__() (autoprotocol.liquid_handle.liquid_class.VolumeCalibrationBin static method) __repr__() (autoprotocol.container.Container method) (autoprotocol.container.Well method) (autoprotocol.container.WellGroup method) (autoprotocol.liquid_handle.liquid_class.VolumeCalibrationBin method)

__setitem__() (autoprotocol.container.WellGroup method) __str__() (autoprotocol.unit.Unit method) _destination_liquid (autoprotocol.liquid_handle.transfer.Transfer attribute) _liquid (autoprotocol.liquid_handle.mix.Mix attribute) _safe_volume_multiplier (autoprotocol.liquid_handle.liquid_class.LiquidClass attribute) _shape (autoprotocol.liquid_handle.liquid_handle_method.LiquidHandleMethod attribute) _source_liquid (autoprotocol.liquid_handle.transfer.Transfer attribute) _transports (autoprotocol.liquid_handle.liquid_handle_method.LiquidHandleMethod attribute)

A

Absorbance (class in autoprotocol.instruction) absorbance() (autoprotocol.protocol.Protocol method) absorbance_mode_params() (autoprotocol.builders.SpectrophotometryBuilders method) acoustic_transfer() (autoprotocol.protocol.Protocol method) AcousticTransfer (class in autoprotocol.instruction) add_properties() (autoprotocol.container.Well method) (autoprotocol.container.WellGroup method) add_time_constraint() (autoprotocol.protocol.Protocol method) Agitate (class in autoprotocol.instruction) agitate() (autoprotocol.protocol.Protocol method) all_wells() (autoprotocol.container.Container method) append() (autoprotocol.container.WellGroup method)

as_dict() (autoprotocol.protocol.Protocol method) aspirate_flowrate_calibration_curve (autoprotocol.liquid_handle.liquid_class.LiquidClass attribute) Autopick (class in autoprotocol.instruction) autopick() (autoprotocol.protocol.Protocol method) autoprotocol.builders (module) autoprotocol.instruction (module) autoprotocol.liquid_handle.liquid_class (module) autoprotocol.liquid_handle.liquid_handle_method (module) autoprotocol.liquid_handle.mix (module) autoprotocol.liquid_handle.tip_type (module) autoprotocol.liquid_handle.transfer (module) autoprotocol.protocol (module) available_volume() (autoprotocol.container.Well method)

B

band() (autoprotocol.builders.GelPurifyBuilders method) batch_containers() (autoprotocol.protocol.Protocol method)

binned_calibration_for_volume() (autoprotocol.liquid_handle.liquid_class.VolumeCalibration method) blowout() (autoprotocol.builders.LiquidHandleBuilders method)

C

calibrate_volume() (autoprotocol.liquid_handle.liquid_class.VolumeCalibrationBin method) ceil() (autoprotocol.unit.Unit method) channel() (autoprotocol.builders.FlowCytometryBuilders method) collection_conditions() (autoprotocol.builders.FlowCytometryBuilders method) column() (autoprotocol.builders.DispenseBuilders static method) columns() (autoprotocol.builders.DispenseBuilders method) Container (class in autoprotocol.container)

container_type() (autoprotocol.protocol.Protocol method) ContainerType (class in autoprotocol.container_type) count() (autoprotocol.liquid_handle.liquid_class.VolumeCalibrationBin method) count_cells() (autoprotocol.protocol.Protocol method) CountCells (class in autoprotocol.instruction) Cover (class in autoprotocol.instruction) cover() (autoprotocol.protocol.Protocol method)

D

decompose() (autoprotocol.container.Container method) (autoprotocol.container_type.ContainerType method) DEEP24 (in module autoprotocol.container_type) DEEP96 (in module autoprotocol.container_type) DEEP96KF (in module autoprotocol.container_type) default_aspirate_z() (autoprotocol.liquid_handle.transfer.DryWellTransfer method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer method) (autoprotocol.liquid_handle.transfer.Transfer method) default_blowout() (autoprotocol.liquid_handle.liquid_handle_method.LiquidHandleMethod method) (autoprotocol.liquid_handle.mix.Mix method) (autoprotocol.liquid_handle.transfer.DryWellTransfer method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer method) (autoprotocol.liquid_handle.transfer.Transfer method) default_dispense_z() (autoprotocol.liquid_handle.transfer.DryWellTransfer method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer method) (autoprotocol.liquid_handle.transfer.Transfer method) default_lld_position_z() (autoprotocol.liquid_handle.liquid_handle_method.LiquidHandleMethod static method) (autoprotocol.liquid_handle.mix.Mix static method) (autoprotocol.liquid_handle.transfer.DryWellTransfer static method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer static method) (autoprotocol.liquid_handle.transfer.Transfer static method) default_mix_after() (autoprotocol.liquid_handle.transfer.DryWellTransfer method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer method) (autoprotocol.liquid_handle.transfer.Transfer method) default_mix_before() (autoprotocol.liquid_handle.transfer.DryWellTransfer method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer method) (autoprotocol.liquid_handle.transfer.Transfer method) default_position_z() (autoprotocol.liquid_handle.mix.Mix method) default_pre_mix_blowout() (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer method) default_prime() (autoprotocol.liquid_handle.transfer.DryWellTransfer method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer method) (autoprotocol.liquid_handle.transfer.Transfer method)

default_repetitions() (autoprotocol.liquid_handle.mix.Mix method) default_tracked_position_z() (autoprotocol.liquid_handle.liquid_handle_method.LiquidHandleMethod static method) (autoprotocol.liquid_handle.mix.Mix static method) (autoprotocol.liquid_handle.transfer.DryWellTransfer static method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer static method) (autoprotocol.liquid_handle.transfer.Transfer static method) default_transit() (autoprotocol.liquid_handle.transfer.DryWellTransfer method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer method) (autoprotocol.liquid_handle.transfer.Transfer method) default_well_bottom_position_z() (autoprotocol.liquid_handle.liquid_handle_method.LiquidHandleMethod static method) (autoprotocol.liquid_handle.mix.Mix static method) (autoprotocol.liquid_handle.transfer.DryWellTransfer static method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer static method) (autoprotocol.liquid_handle.transfer.Transfer static method) default_well_top_position_z() (autoprotocol.liquid_handle.liquid_handle_method.LiquidHandleMethod static method) (autoprotocol.liquid_handle.mix.Mix static method) (autoprotocol.liquid_handle.transfer.DryWellTransfer static method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer static method) (autoprotocol.liquid_handle.transfer.Transfer static method) desired_mode() (autoprotocol.builders.LiquidHandleBuilders method) discard() (autoprotocol.container.Container method) Dispense (class in autoprotocol.instruction) dispense() (autoprotocol.protocol.Protocol method) dispense_flowrate_calibration_curve (autoprotocol.liquid_handle.liquid_class.LiquidClass attribute) dispense_full_plate() (autoprotocol.protocol.Protocol method) DispenseBuilders (class in autoprotocol.builders) DryWellTransfer (class in autoprotocol.liquid_handle.transfer) dyes() (autoprotocol.builders.ThermocycleBuilders method) dyes_from_well_map() (autoprotocol.builders.ThermocycleBuilders method)

E

ECHO384 (in module autoprotocol.container_type) ECHO384LDV (in module autoprotocol.container_type) ECHO384LDVPLUS (in module autoprotocol.container_type) emission_filter() (autoprotocol.builders.FlowCytometryBuilders method)

Evaporate (class in autoprotocol.instruction) evaporate() (autoprotocol.protocol.Protocol method) EvaporateBuilders (class in autoprotocol.builders) extend() (autoprotocol.container.WellGroup method) extract() (autoprotocol.builders.GelPurifyBuilders method)

F

flash_freeze() (autoprotocol.protocol.Protocol method) FlashFreeze (class in autoprotocol.instruction) FLAT1 (in module autoprotocol.container_type) FLAT384 (in module autoprotocol.container_type) FLAT384CLEAR (in module autoprotocol.container_type) FLAT384WHITELV (in module autoprotocol.container_type) FLAT384WHITETC (in module autoprotocol.container_type) FLAT6 (in module autoprotocol.container_type) FLAT6TC (in module autoprotocol.container_type) FLAT96 (in module autoprotocol.container_type) FLAT96CLEARTC (in module autoprotocol.container_type)

FLAT96UV (in module autoprotocol.container_type) floor() (autoprotocol.unit.Unit method) flow_analyze() (autoprotocol.protocol.Protocol method) flow_cytometry() (autoprotocol.protocol.Protocol method) FlowAnalyze (class in autoprotocol.instruction) FlowCytometry (class in autoprotocol.instruction) FlowCytometryBuilders (class in autoprotocol.builders) flowrate() (autoprotocol.builders.LiquidHandleBuilders static method) Fluorescence (class in autoprotocol.instruction) fluorescence() (autoprotocol.protocol.Protocol method) fluorescence_mode_params() (autoprotocol.builders.SpectrophotometryBuilders method)

G

gel_purify() (autoprotocol.protocol.Protocol method) gel_separate() (autoprotocol.protocol.Protocol method) GelPurify (class in autoprotocol.instruction) GelPurifyBuilders (class in autoprotocol.builders) GelSeparate (class in autoprotocol.instruction)

get_instruction_index() (autoprotocol.protocol.Protocol method) get_mode_params() (autoprotocol.builders.EvaporateBuilders method) get_wells() (autoprotocol.instruction.Instruction method) group() (autoprotocol.builders.SpectrophotometryBuilders method) (autoprotocol.builders.ThermocycleBuilders method) groups() (autoprotocol.builders.SpectrophotometryBuilders method)

H

humanize() (autoprotocol.container.Container method) (autoprotocol.container.Well method) (autoprotocol.container_type.ContainerType method)

I

IlluminaSeq (class in autoprotocol.instruction) illuminaseq() (autoprotocol.protocol.Protocol method) Image (class in autoprotocol.instruction) image() (autoprotocol.protocol.Protocol method) image_plate() (autoprotocol.protocol.Protocol method) ImagePlate (class in autoprotocol.instruction) Incubate (class in autoprotocol.instruction) incubate() (autoprotocol.protocol.Protocol method) incubate_params() (autoprotocol.builders.PlateReaderBuilders method) index() (autoprotocol.liquid_handle.liquid_class.VolumeCalibrationBin method)

indices() (autoprotocol.container.WellGroup method) inner_wells() (autoprotocol.container.Container method) insert() (autoprotocol.container.WellGroup method) Instruction (class in autoprotocol.instruction) instruction_mode_params() (autoprotocol.builders.LiquidHandleBuilders static method) InstructionBuilders (class in autoprotocol.builders) intercept() (autoprotocol.liquid_handle.liquid_class.VolumeCalibrationBin property) is_covered() (autoprotocol.container.Container method) is_sealed() (autoprotocol.container.Container method) is_valid_well() (in module autoprotocol.util)

L

laser() (autoprotocol.builders.FlowCytometryBuilders method) LiquidClass (class in autoprotocol.liquid_handle.liquid_class) LiquidHandle (class in autoprotocol.instruction) LiquidHandleBuilders (class in autoprotocol.builders)

LiquidHandleMethod (class in autoprotocol.liquid_handle.liquid_handle_method) location() (autoprotocol.builders.LiquidHandleBuilders method) Luminescence (class in autoprotocol.instruction) luminescence() (autoprotocol.protocol.Protocol method) luminescence_mode_params() (autoprotocol.builders.SpectrophotometryBuilders method)

M

mag_collect() (autoprotocol.builders.MagneticTransferBuilders static method) (autoprotocol.protocol.Protocol method) mag_dry() (autoprotocol.builders.MagneticTransferBuilders static method) (autoprotocol.protocol.Protocol method) mag_incubate() (autoprotocol.builders.MagneticTransferBuilders static method) (autoprotocol.protocol.Protocol method) mag_mix() (autoprotocol.builders.MagneticTransferBuilders static method) (autoprotocol.protocol.Protocol method) mag_release() (autoprotocol.builders.MagneticTransferBuilders static method) (autoprotocol.protocol.Protocol method) MagneticTransfer (class in autoprotocol.instruction) MagneticTransferBuilders (class in autoprotocol.builders) magnitude() (autoprotocol.unit.Unit property) Manifest (class in autoprotocol.harness) measure_concentration() (autoprotocol.protocol.Protocol method)

measure_mass() (autoprotocol.protocol.Protocol method) measure_volume() (autoprotocol.protocol.Protocol method) MeasureConcentration (class in autoprotocol.instruction) MeasureMass (class in autoprotocol.instruction) measurements() (autoprotocol.builders.FlowCytometryBuilders static method) MeasureVolume (class in autoprotocol.instruction) melting() (autoprotocol.builders.ThermocycleBuilders static method) MICRO15 (in module autoprotocol.container_type) MICRO2 (in module autoprotocol.container_type) Mix (class in autoprotocol.liquid_handle.mix) mix() (autoprotocol.builders.LiquidHandleBuilders method) (autoprotocol.protocol.Protocol method) mobile_phase_params() (autoprotocol.builders.SPEBuilders method) mode_params() (autoprotocol.builders.LiquidHandleBuilders method) move_rate() (autoprotocol.builders.LiquidHandleBuilders static method)

N

name (autoprotocol.liquid_handle.liquid_class.LiquidClass attribute)

nozzle_position() (autoprotocol.builders.DispenseBuilders static method)

O

Oligosynthesize (class in autoprotocol.instruction)

oligosynthesize() (autoprotocol.protocol.Protocol method)

P

parse_unit() (in module autoprotocol.util) PCR384 (in module autoprotocol.container_type) PCR96 (in module autoprotocol.container_type) PlateReaderBuilders (class in autoprotocol.builders) pop() (autoprotocol.container.WellGroup method) position_xy() (autoprotocol.builders.LiquidHandleBuilders method)

position_z() (autoprotocol.builders.LiquidHandleBuilders method) position_z_calculated() (autoprotocol.builders.SpectrophotometryBuilders method) position_z_manual() (autoprotocol.builders.SpectrophotometryBuilders method) PreMixBlowoutTransfer (class in autoprotocol.liquid_handle.transfer) Protocol (class in autoprotocol.protocol) Provision (class in autoprotocol.instruction) provision() (autoprotocol.protocol.Protocol method)

Q

quadrant() (autoprotocol.container.Container method)

R

Ref (class in autoprotocol.protocol) ref() (autoprotocol.protocol.Protocol method) RESMW12HP (in module autoprotocol.container_type) RESMW8HP (in module autoprotocol.container_type) RESSW384LP (in module autoprotocol.container_type) RESSW96HP (in module autoprotocol.container_type)

robotize() (autoprotocol.container.Container method) (autoprotocol.container_type.ContainerType method) round() (autoprotocol.unit.Unit method) ROUND384CLEAR (in module autoprotocol.container_type) row_count() (autoprotocol.container_type.ContainerType method) run() (in module autoprotocol.harness)

S

SangerSeq (class in autoprotocol.instruction) sangerseq() (autoprotocol.protocol.Protocol method) Seal (class in autoprotocol.instruction) seal() (autoprotocol.protocol.Protocol method) seal_on_store() (in module autoprotocol.harness) set_group_name() (autoprotocol.container.WellGroup method) set_name() (autoprotocol.container.Well method) set_properties() (autoprotocol.container.Well method) (autoprotocol.container.WellGroup method) set_storage() (autoprotocol.container.Container method) set_volume() (autoprotocol.container.Well method) (autoprotocol.container.WellGroup method) shake_after() (autoprotocol.builders.DispenseBuilders method) shake_before() (autoprotocol.builders.SpectrophotometryBuilders method) shake_mode_params() (autoprotocol.builders.SpectrophotometryBuilders method) shape() (autoprotocol.builders.DispenseBuilders method) (autoprotocol.builders.EvaporateBuilders method) (autoprotocol.builders.FlowCytometryBuilders method) (autoprotocol.builders.GelPurifyBuilders method) (autoprotocol.builders.InstructionBuilders method) (autoprotocol.builders.LiquidHandleBuilders method) (autoprotocol.builders.MagneticTransferBuilders method) (autoprotocol.builders.PlateReaderBuilders method) (autoprotocol.builders.SPEBuilders method) (autoprotocol.builders.SpectrophotometryBuilders method) (autoprotocol.builders.ThermocycleBuilders method)

slope() (autoprotocol.liquid_handle.liquid_class.VolumeCalibrationBin property) Sonicate (class in autoprotocol.instruction) sonicate() (autoprotocol.protocol.Protocol method) SPE (class in autoprotocol.instruction) spe() (autoprotocol.protocol.Protocol method) SPEBuilders (class in autoprotocol.builders) Spectrophotometry (class in autoprotocol.instruction) spectrophotometry() (autoprotocol.protocol.Protocol method) SpectrophotometryBuilders (class in autoprotocol.builders) Spin (class in autoprotocol.instruction) spin() (autoprotocol.protocol.Protocol method) spread() (autoprotocol.protocol.Protocol method) step() (autoprotocol.builders.ThermocycleBuilders static method) stop_criteria() (autoprotocol.builders.FlowCytometryBuilders static method) store() (autoprotocol.protocol.Protocol method)

T

Thermocycle (class in autoprotocol.instruction) thermocycle() (autoprotocol.protocol.Protocol method) ThermocycleBuilders (class in autoprotocol.builders)

Transfer (class in autoprotocol.liquid_handle.transfer) transfer() (autoprotocol.protocol.Protocol method) transport() (autoprotocol.builders.LiquidHandleBuilders method) tube() (autoprotocol.container.Container method)

U

Uncover (class in autoprotocol.instruction) uncover() (autoprotocol.protocol.Protocol method)

Unit (class in autoprotocol.unit) Unseal (class in autoprotocol.instruction) unseal() (autoprotocol.protocol.Protocol method)

V

V384CLEAR (in module autoprotocol.container_type) V96KF (in module autoprotocol.container_type)

volume_calibration_curve (autoprotocol.liquid_handle.liquid_class.LiquidClass attribute) VolumeCalibration (class in autoprotocol.liquid_handle.liquid_class) VolumeCalibrationBin (class in autoprotocol.liquid_handle.liquid_class)

W

wavelength_selection() (autoprotocol.builders.SpectrophotometryBuilders static method) Well (class in autoprotocol.container) well() (autoprotocol.container.Container method) well_from_coordinates() (autoprotocol.container.Container method) (autoprotocol.container_type.ContainerType method)

WellGroup (class in autoprotocol.container) wells() (autoprotocol.container.Container method) wells_from() (autoprotocol.container.Container method) wells_from_shape() (autoprotocol.container.Container method) wells_with() (autoprotocol.container.WellGroup method)