Index

_

__add__() (autoprotocol.container.WellGroup method) __getitem__() (autoprotocol.container.WellGroup method) __len__() (autoprotocol.container.WellGroup method) __new__() (autoprotocol.liquid_handle.liquid_class.VolumeCalibrationBin static method) __repr__() (autoprotocol.container.Container method) (autoprotocol.container.Well method) (autoprotocol.container.WellGroup method)

__setitem__() (autoprotocol.container.WellGroup method) __str__() (autoprotocol.unit.Unit method) _destination_liquid (autoprotocol.liquid_handle.transfer.Transfer attribute) _liquid (autoprotocol.liquid_handle.mix.Mix attribute) _safe_volume_multiplier (autoprotocol.liquid_handle.liquid_class.LiquidClass attribute) _shape (autoprotocol.liquid_handle.liquid_handle_method.LiquidHandleMethod attribute) _source_liquid (autoprotocol.liquid_handle.transfer.Transfer attribute) _transports (autoprotocol.liquid_handle.liquid_handle_method.LiquidHandleMethod attribute)

A

Absorbance (class in autoprotocol.instruction) absorbance() (autoprotocol.protocol.Protocol method) absorbance_mode_params() (autoprotocol.builders.SpectrophotometryBuilders method) acoustic_transfer() (autoprotocol.protocol.Protocol method) AcousticTransfer (class in autoprotocol.instruction) add_properties() (autoprotocol.container.WellGroup method) add_time_constraint() (autoprotocol.protocol.Protocol method) add_volume() (autoprotocol.container.Well method) Agitate (class in autoprotocol.instruction) agitate() (autoprotocol.protocol.Protocol method) all_wells() (autoprotocol.container.Container method) append() (autoprotocol.container.WellGroup method) as_dict() (autoprotocol.protocol.Protocol method) aspirate_flowrate_calibration_curve (autoprotocol.liquid_handle.liquid_class.LiquidClass attribute) Autopick (class in autoprotocol.instruction) autopick() (autoprotocol.protocol.Protocol method)

autoprotocol.builders module autoprotocol.instruction module autoprotocol.liquid_handle.liquid_class module autoprotocol.liquid_handle.liquid_handle_method module autoprotocol.liquid_handle.mix module autoprotocol.liquid_handle.tip_type module autoprotocol.liquid_handle.transfer module autoprotocol.protocol module available_volume() (autoprotocol.container.Well method)

B

band() (autoprotocol.builders.GelPurifyBuilders method) batch_containers() (autoprotocol.protocol.Protocol method)

binned_calibration_for_volume() (autoprotocol.liquid_handle.liquid_class.VolumeCalibration method) blowout (autoprotocol.liquid_handle.liquid_handle_method.LiquidHandleMethod attribute) blowout() (autoprotocol.builders.LiquidHandleBuilders method)

C

calibrate_volume() (autoprotocol.liquid_handle.liquid_class.VolumeCalibrationBin method) ceil() (autoprotocol.unit.Unit method) channel() (autoprotocol.builders.FlowCytometryBuilders method) collection_conditions() (autoprotocol.builders.FlowCytometryBuilders method) column() (autoprotocol.builders.DispenseBuilders static method) columns() (autoprotocol.builders.DispenseBuilders method) Container (class in autoprotocol.container)

container_type() (autoprotocol.protocol.Protocol method) ContainerType (class in autoprotocol.container_type) count() (autoprotocol.liquid_handle.liquid_class.VolumeCalibrationBin method) count_cells() (autoprotocol.protocol.Protocol method) CountCells (class in autoprotocol.instruction) Cover (class in autoprotocol.instruction) cover() (autoprotocol.protocol.Protocol method)

D

decompose() (autoprotocol.container.Container method) (autoprotocol.container_type.ContainerType method) DEEP24 (in module autoprotocol.container_type) DEEP96 (in module autoprotocol.container_type) DEEP96KF (in module autoprotocol.container_type) default_aspirate_z() (autoprotocol.liquid_handle.transfer.DryWellTransfer method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer method) (autoprotocol.liquid_handle.transfer.Transfer method) default_blowout() (autoprotocol.liquid_handle.liquid_handle_method.LiquidHandleMethod method) (autoprotocol.liquid_handle.mix.Mix method) (autoprotocol.liquid_handle.transfer.DryWellTransfer method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer method) (autoprotocol.liquid_handle.transfer.Transfer method) default_dispense_z() (autoprotocol.liquid_handle.transfer.DryWellTransfer method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer method) (autoprotocol.liquid_handle.transfer.Transfer method) default_lld_position_z() (autoprotocol.liquid_handle.liquid_handle_method.LiquidHandleMethod static method) (autoprotocol.liquid_handle.mix.Mix static method) (autoprotocol.liquid_handle.transfer.DryWellTransfer static method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer static method) (autoprotocol.liquid_handle.transfer.Transfer static method) default_mix_after() (autoprotocol.liquid_handle.transfer.DryWellTransfer method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer method) (autoprotocol.liquid_handle.transfer.Transfer method) default_mix_before() (autoprotocol.liquid_handle.transfer.DryWellTransfer method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer method) (autoprotocol.liquid_handle.transfer.Transfer method) default_position_z() (autoprotocol.liquid_handle.mix.Mix method) default_pre_mix_blowout() (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer method) default_prime() (autoprotocol.liquid_handle.transfer.DryWellTransfer method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer method) (autoprotocol.liquid_handle.transfer.Transfer method)

default_repetitions() (autoprotocol.liquid_handle.mix.Mix method) default_tracked_position_z() (autoprotocol.liquid_handle.liquid_handle_method.LiquidHandleMethod static method) (autoprotocol.liquid_handle.mix.Mix static method) (autoprotocol.liquid_handle.transfer.DryWellTransfer static method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer static method) (autoprotocol.liquid_handle.transfer.Transfer static method) default_transit() (autoprotocol.liquid_handle.transfer.DryWellTransfer method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer method) (autoprotocol.liquid_handle.transfer.Transfer method) default_well_bottom_position_z() (autoprotocol.liquid_handle.liquid_handle_method.LiquidHandleMethod static method) (autoprotocol.liquid_handle.mix.Mix static method) (autoprotocol.liquid_handle.transfer.DryWellTransfer static method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer static method) (autoprotocol.liquid_handle.transfer.Transfer static method) default_well_top_position_z() (autoprotocol.liquid_handle.liquid_handle_method.LiquidHandleMethod static method) (autoprotocol.liquid_handle.mix.Mix static method) (autoprotocol.liquid_handle.transfer.DryWellTransfer static method) (autoprotocol.liquid_handle.transfer.PreMixBlowoutTransfer static method) (autoprotocol.liquid_handle.transfer.Transfer static method) desired_mode() (autoprotocol.builders.LiquidHandleBuilders method) device_mode_params() (autoprotocol.builders.LiquidHandleBuilders static method) discard() (autoprotocol.container.Container method) Dispense (class in autoprotocol.instruction) dispense() (autoprotocol.protocol.Protocol method) dispense_flowrate_calibration_curve (autoprotocol.liquid_handle.liquid_class.LiquidClass attribute) dispense_full_plate() (autoprotocol.protocol.Protocol method) DispenseBuilders (class in autoprotocol.builders) DryWellTransfer (class in autoprotocol.liquid_handle.transfer) dyes() (autoprotocol.builders.ThermocycleBuilders method) dyes_from_well_map() (autoprotocol.builders.ThermocycleBuilders method)

E

ECHO384 (in module autoprotocol.container_type) ECHO384LDV (in module autoprotocol.container_type) ECHO384LDVPLUS (in module autoprotocol.container_type) emission_filter() (autoprotocol.builders.FlowCytometryBuilders method)

Evaporate (class in autoprotocol.instruction) evaporate() (autoprotocol.protocol.Protocol method) EvaporateBuilders (class in autoprotocol.builders) extend() (autoprotocol.container.WellGroup method) extract() (autoprotocol.builders.GelPurifyBuilders method)

F

flash_freeze() (autoprotocol.protocol.Protocol method) FlashFreeze (class in autoprotocol.instruction) FLAT1 (in module autoprotocol.container_type) FLAT384 (in module autoprotocol.container_type) FLAT384CLEAR (in module autoprotocol.container_type) FLAT384WHITELV (in module autoprotocol.container_type) FLAT384WHITETC (in module autoprotocol.container_type) FLAT6 (in module autoprotocol.container_type) FLAT6TC (in module autoprotocol.container_type) FLAT96 (in module autoprotocol.container_type) FLAT96CLEARTC (in module autoprotocol.container_type)

FLAT96UV (in module autoprotocol.container_type) floor() (autoprotocol.unit.Unit method) flow_analyze() (autoprotocol.protocol.Protocol method) flow_cytometry() (autoprotocol.protocol.Protocol method) FlowAnalyze (class in autoprotocol.instruction) FlowCytometry (class in autoprotocol.instruction) FlowCytometryBuilders (class in autoprotocol.builders) flowrate() (autoprotocol.builders.LiquidHandleBuilders static method) Fluorescence (class in autoprotocol.instruction) fluorescence() (autoprotocol.protocol.Protocol method) fluorescence_mode_params() (autoprotocol.builders.SpectrophotometryBuilders method)

G

gel_purify() (autoprotocol.protocol.Protocol method) gel_separate() (autoprotocol.protocol.Protocol method) GelPurify (class in autoprotocol.instruction) GelPurifyBuilders (class in autoprotocol.builders) GelSeparate (class in autoprotocol.instruction)

get_instruction_index() (autoprotocol.protocol.Protocol method) get_mode_params() (autoprotocol.builders.EvaporateBuilders method) get_wells() (autoprotocol.instruction.Instruction method) group() (autoprotocol.builders.SpectrophotometryBuilders method) (autoprotocol.builders.ThermocycleBuilders method) groups() (autoprotocol.builders.SpectrophotometryBuilders method)

H

humanize() (autoprotocol.container.Container method) (autoprotocol.container.Well method) (autoprotocol.container_type.ContainerType method)

I

IlluminaSeq (class in autoprotocol.instruction) illuminaseq() (autoprotocol.protocol.Protocol method) Image (class in autoprotocol.instruction) image() (autoprotocol.protocol.Protocol method) image_plate() (autoprotocol.protocol.Protocol method) ImagePlate (class in autoprotocol.instruction) Incubate (class in autoprotocol.instruction) incubate() (autoprotocol.protocol.Protocol method) incubate_params() (autoprotocol.builders.PlateReaderBuilders method) index() (autoprotocol.liquid_handle.liquid_class.VolumeCalibrationBin method)

indices() (autoprotocol.container.WellGroup method) inner_wells() (autoprotocol.container.Container method) insert() (autoprotocol.container.WellGroup method) Instruction (class in autoprotocol.instruction) instruction_mode_params() (autoprotocol.builders.LiquidHandleBuilders static method) InstructionBuilders (class in autoprotocol.builders) intercept (autoprotocol.liquid_handle.liquid_class.VolumeCalibrationBin property) is_covered() (autoprotocol.container.Container method) is_sealed() (autoprotocol.container.Container method) is_valid_well() (in module autoprotocol.util)

L

laser() (autoprotocol.builders.FlowCytometryBuilders method) liquid_handle_dispense() (autoprotocol.protocol.Protocol method) LiquidClass (class in autoprotocol.liquid_handle.liquid_class) LiquidHandle (class in autoprotocol.instruction) LiquidHandleBuilders (class in autoprotocol.builders)

LiquidHandleMethod (class in autoprotocol.liquid_handle.liquid_handle_method) location() (autoprotocol.builders.LiquidHandleBuilders method) Luminescence (class in autoprotocol.instruction) luminescence() (autoprotocol.protocol.Protocol method) luminescence_mode_params() (autoprotocol.builders.SpectrophotometryBuilders method)

M

mag_collect() (autoprotocol.builders.MagneticTransferBuilders static method) (autoprotocol.protocol.Protocol method) mag_dry() (autoprotocol.builders.MagneticTransferBuilders static method) (autoprotocol.protocol.Protocol method) mag_incubate() (autoprotocol.builders.MagneticTransferBuilders static method) (autoprotocol.protocol.Protocol method) mag_mix() (autoprotocol.builders.MagneticTransferBuilders static method) (autoprotocol.protocol.Protocol method) mag_release() (autoprotocol.builders.MagneticTransferBuilders static method) (autoprotocol.protocol.Protocol method) MagneticTransfer (class in autoprotocol.instruction) MagneticTransferBuilders (class in autoprotocol.builders) magnitude (autoprotocol.unit.Unit property) Manifest (class in autoprotocol.harness) measure_concentration() (autoprotocol.protocol.Protocol method) measure_mass() (autoprotocol.protocol.Protocol method) measure_volume() (autoprotocol.protocol.Protocol method) MeasureConcentration (class in autoprotocol.instruction) MeasureMass (class in autoprotocol.instruction)

measurements() (autoprotocol.builders.FlowCytometryBuilders static method) MeasureVolume (class in autoprotocol.instruction) melting() (autoprotocol.builders.ThermocycleBuilders static method) MICRO15 (in module autoprotocol.container_type) MICRO2 (in module autoprotocol.container_type) Mix (class in autoprotocol.liquid_handle.mix) mix() (autoprotocol.builders.LiquidHandleBuilders method) (autoprotocol.protocol.Protocol method) mobile_phase_params() (autoprotocol.builders.SPEBuilders method) mode_params() (autoprotocol.builders.LiquidHandleBuilders method) module autoprotocol.builders autoprotocol.instruction autoprotocol.liquid_handle.liquid_class autoprotocol.liquid_handle.liquid_handle_method autoprotocol.liquid_handle.mix autoprotocol.liquid_handle.tip_type autoprotocol.liquid_handle.transfer autoprotocol.protocol move_rate() (autoprotocol.builders.LiquidHandleBuilders static method)

N

name (autoprotocol.liquid_handle.liquid_class.LiquidClass attribute)

nozzle_position() (autoprotocol.builders.DispenseBuilders static method)

O

Oligosynthesize (class in autoprotocol.instruction)

oligosynthesize() (autoprotocol.protocol.Protocol method)

P

parse_unit() (in module autoprotocol.util) PCR384 (in module autoprotocol.container_type) PCR96 (in module autoprotocol.container_type) PlateReaderBuilders (class in autoprotocol.builders) plld_threshold (autoprotocol.liquid_handle.liquid_class.LiquidClass attribute) pop() (autoprotocol.container.WellGroup method) position_xy() (autoprotocol.builders.LiquidHandleBuilders method)

position_z() (autoprotocol.builders.LiquidHandleBuilders method) position_z_calculated() (autoprotocol.builders.SpectrophotometryBuilders method) position_z_manual() (autoprotocol.builders.SpectrophotometryBuilders method) PreMixBlowoutTransfer (class in autoprotocol.liquid_handle.transfer) Protocol (class in autoprotocol.protocol) Provision (class in autoprotocol.instruction) provision() (autoprotocol.protocol.Protocol method)

Q

quadrant() (autoprotocol.container.Container method)

R

ref() (autoprotocol.protocol.Protocol method) RESMW12HP (in module autoprotocol.container_type) RESMW8HP (in module autoprotocol.container_type) RESSW384LP (in module autoprotocol.container_type) RESSW96HP (in module autoprotocol.container_type)

robotize() (autoprotocol.container.Container method) (autoprotocol.container_type.ContainerType method) round() (autoprotocol.unit.Unit method) ROUND384CLEAR (in module autoprotocol.container_type) row_count() (autoprotocol.container_type.ContainerType method) run() (in module autoprotocol.harness)

S

SangerSeq (class in autoprotocol.instruction) sangerseq() (autoprotocol.protocol.Protocol method) Seal (class in autoprotocol.instruction) seal() (autoprotocol.protocol.Protocol method) seal_on_store() (in module autoprotocol.harness) set_compounds() (autoprotocol.container.Well method) set_group_name() (autoprotocol.container.WellGroup method) set_mass() (autoprotocol.container.Well method) set_name() (autoprotocol.container.Well method) set_properties() (autoprotocol.container.WellGroup method) set_storage() (autoprotocol.container.Container method) set_volume() (autoprotocol.container.Well method) (autoprotocol.container.WellGroup method) shake_after() (autoprotocol.builders.DispenseBuilders method) shake_before() (autoprotocol.builders.SpectrophotometryBuilders method) shake_mode_params() (autoprotocol.builders.SpectrophotometryBuilders method) shape() (autoprotocol.builders.DispenseBuilders method) (autoprotocol.builders.EvaporateBuilders method) (autoprotocol.builders.FlowCytometryBuilders method) (autoprotocol.builders.GelPurifyBuilders method) (autoprotocol.builders.InstructionBuilders method) (autoprotocol.builders.LiquidHandleBuilders method) (autoprotocol.builders.MagneticTransferBuilders method) (autoprotocol.builders.PlateReaderBuilders method) (autoprotocol.builders.SPEBuilders method) (autoprotocol.builders.SpectrophotometryBuilders method) (autoprotocol.builders.ThermocycleBuilders method)

slope (autoprotocol.liquid_handle.liquid_class.VolumeCalibrationBin property) Sonicate (class in autoprotocol.instruction) sonicate() (autoprotocol.protocol.Protocol method) SPE (class in autoprotocol.instruction) spe() (autoprotocol.protocol.Protocol method) SPEBuilders (class in autoprotocol.builders) Spectrophotometry (class in autoprotocol.instruction) spectrophotometry() (autoprotocol.protocol.Protocol method) SpectrophotometryBuilders (class in autoprotocol.builders) Spin (class in autoprotocol.instruction) spin() (autoprotocol.protocol.Protocol method) spread() (autoprotocol.protocol.Protocol method) step() (autoprotocol.builders.ThermocycleBuilders static method) stop_criteria() (autoprotocol.builders.FlowCytometryBuilders static method) store() (autoprotocol.protocol.Protocol method)

T

Thermocycle (class in autoprotocol.instruction) thermocycle() (autoprotocol.protocol.Protocol method) ThermocycleBuilders (class in autoprotocol.builders) time_constraints (autoprotocol.protocol.Protocol attribute)

Transfer (class in autoprotocol.liquid_handle.transfer) transfer() (autoprotocol.protocol.Protocol method) transport() (autoprotocol.builders.LiquidHandleBuilders method) tube() (autoprotocol.container.Container method)

U

Uncover (class in autoprotocol.instruction) uncover() (autoprotocol.protocol.Protocol method) Unit (class in autoprotocol.unit)

units (autoprotocol.unit.Unit attribute) Unseal (class in autoprotocol.instruction) unseal() (autoprotocol.protocol.Protocol method)

V

V384CLEAR (in module autoprotocol.container_type) V96KF (in module autoprotocol.container_type)

volume_calibration_curve (autoprotocol.liquid_handle.liquid_class.LiquidClass attribute) VolumeCalibration (class in autoprotocol.liquid_handle.liquid_class) VolumeCalibrationBin (class in autoprotocol.liquid_handle.liquid_class)

W

wavelength_selection() (autoprotocol.builders.SpectrophotometryBuilders static method) Well (class in autoprotocol.container) well() (autoprotocol.container.Container method) well_from_coordinates() (autoprotocol.container.Container method) (autoprotocol.container_type.ContainerType method)

WellGroup (class in autoprotocol.container) wells() (autoprotocol.container.Container method) wells_from() (autoprotocol.container.Container method) wells_from_shape() (autoprotocol.container.Container method) wells_with() (autoprotocol.container.WellGroup method)